|AceView||(NCBI)||AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace).|
|AmiGO||(Open Biomedical Technologies)||The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.|
|ClustalW2 Multiple Sequence Alignment||(EMBL-EBI)||ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Evolutionary relationships can be seen via viewing Cladograms or Phylograms. |
|Ensembl Genome Browser||(EMBL-EBI and Sanger Institute)|
|Entrez Databases - PubMed, Gene, Peptide, etc.||(NCBI)|
|Pfam||(Sanger Institute)||The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). |
|Scansite||(MIT)||Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
It also contains a useful feature for calculating molecular weight and isoelectric points of given sequences|
|ScanSite Molecular Weight & Isoelectric Point Calculator||(MIT)|
|T-Coffee||(EMBL-EBI)||T-Coffee is a multiple sequence alignment program. Multiple sequence alignment programs are meant to align a set of sequences previously gathered using other programs such as blast, fast, sw ...
|UniProt (Universal Protein Resource)||(EBI, SIB and PIR)||UniProt provides the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.